| Functional enrichment on genomic regions |
CHIP-seq |
ATAC-seq |
R |
https://github.com/jokergoo/rGREAT |
| Pseudotime inference |
scRNA-seq |
Python |
https://github.com/LouisFaure/scFates |
nan |
| Single-cell analysis package |
scRNA-seq |
Python |
https://github.com/scverse/scanpy |
nan |
| AI probabilistic package for transfer learning |
DR and more |
scRNA-seq |
Python |
https://github.com/scverse/scvi-tools |
| Gene set enrichment analysis on steroids |
scRNA-seq |
Python |
https://github.com/zqfang/GSEApy |
nan |
| UpsetR on stereoids (complicated Venn Diagrams) |
Plotting |
R |
https://github.com/krassowski/complex-upset |
nan |
| Complex heatmap |
Plotting |
Python |
https://github.com/DingWB/PyComplexHeatmap |
nan |